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This research was supported by FEDER through COMPETE (Programa Operacional Fatores de Competitividade) (POCI-01-015-FEDER-016785) and by National Funds through the Portuguese Foundation for Science and Technology (FCT) within the project URGENTpine (PTDC/AGR-FOR/2768/2014). Thanks are due to FCT/MCTES for financial support to CESAM (UID/50017/2020+UIDB/50017/2020) through national funds. FCT also supported J.A. (SFRH/BD/120967/2016). The Spanish Ministry of Economy and Competitiveness supported L.V. through the Ramón y Cajal Programme (RYC-2015-17871) and M.E. by the grant FJCI-2017-31613. COST Action FP1406 PINESTRENGTH (PPC—strategies for management of Gibberella circinata in greenhouses and forests), supported by COST (European Cooperation in Science and Technology), awarded B.C. with a STSM. The James Hutton Institute receives support from the Rural and Environment Science and Analytical Services Division of the Scottish Government.